Research workbench
AlphaFold monomer V2.0 prediction for octopine-binding periplasmic protein (P72298)
Analyse AlphaFold monomer V2.0 prediction for octopine-binding periplasmic protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P72298
- Type
- protein
- Length
- 294 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x0D671490EE06E75975e90D7F99F73B20BE618744
- Molecule
- Octopine-binding periplasmic protein
- UniProt
- P72298
- Pockets
- 4 · best druggability 0.70
Structure
1 distinct chain · 36% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Octopine-binding periplasmic protein | protein | 294 | 36% helix, 25% strand | P72298 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 51 | 0.70 | 0.98 | 20 | empty |
| 2 | 86 | 0.39 | 0.77 | 18 | empty |
| 3 | 107 | 0.36 | 0.74 | 20 | empty |
| 4 | 62 | 0.30 | 0.74 | 14 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P72298
- Elsewhere: UniProt P72298 · AlphaFold DB P72298
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