Research workbench
AlphaFold monomer V2.0 prediction for nuclear pore complex protein NUP88 (Q9FFK6)
Analyse AlphaFold monomer V2.0 prediction for nuclear pore complex protein NUP88… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9FFK6
- Type
- protein
- Length
- 810 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x3a312d9A90f3bb89BFC42BF4b95c23D7295582F9
- Molecule
- Nuclear pore complex protein NUP88
- UniProt
- Q9FFK6
- Pockets
- 12 · best druggability 0.79
Structure
1 distinct chain · 29% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nuclear pore complex protein NUP88 | protein | 810 | 29% helix, 25% strand | Q9FFK6 |
Pockets
12 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1190 | 0.79 | 0.80 | 103 | empty |
| 2 | 412 | 0.61 | 0.77 | 52 | empty |
| 3 | 192 | 0.53 | 0.78 | 27 | empty |
| 4 | 111 | 0.43 | 0.77 | 25 | empty |
| 5 | 66 | 0.39 | 0.80 | 19 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9FFK6
- Elsewhere: UniProt Q9FFK6 · AlphaFold DB Q9FFK6
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