Research workbench
AlphaFold monomer V2.0 prediction for nucleoporin NUP82 (P40368)
Analyse AlphaFold monomer V2.0 prediction for nucleoporin NUP82 (P40368) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P40368
- Type
- protein
- Length
- 713 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd17594Cd912427e6a7fCD33Ca0882306A1017024
- Molecule
- Nucleoporin NUP82
- UniProt
- P40368
- Pockets
- 7 · best druggability 0.79
Structure
1 distinct chain · 39% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoporin NUP82 | protein | 713 | 39% helix, 23% strand | P40368 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 976 | 0.79 | 0.81 | 74 | empty |
| 2 | 133 | 0.54 | 0.81 | 18 | empty |
| 3 | 80 | 0.44 | 0.81 | 19 | empty |
| 4 | 92 | 0.39 | 0.76 | 17 | empty |
| 5 | 66 | 0.35 | 0.77 | 16 | empty |
Compared structures
- 3TKN · Structure of the NUP82-NUP159-NUP98 heterotrimer · an experimental structure of the same protein · chain A against A, TM-score 0.63
- 3TKN · Structure of the Nup82-Nup159-Nup98 heterotrimer · an experimental structure of the same protein · chain A against A, TM-score 0.63
- 3PBP · Structure of the yeast heterotrimeric Nup82-Nup159-Nup116 nucleoporin complex · an experimental structure of the same protein · chain A against J, TM-score 0.61
- 3PBP · Structure of the yeast heterotrimeric NUP82-NUP159-NUP116 nucleoporin complex · an experimental structure of the same protein · chain A against J, TM-score 0.61
- 7N9F · Structure of the in situ yeast NPC · an experimental structure of the same protein · chain A against u, TM-score 0.56
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P40368
- Elsewhere: UniProt P40368 · AlphaFold DB P40368
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