Research workbench
AlphaFold monomer V2.0 prediction for nuclear pore complex protein NUP54 (P70582)
Analyse AlphaFold monomer V2.0 prediction for nuclear pore complex protein NUP54… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P70582
- Type
- protein
- Length
- 510 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x0D671490EE06E75975e90D7F99F73B20BE618744
- Molecule
- Nuclear pore complex protein NUP54
- UniProt
- P70582
- Pockets
- 1 · best druggability 0.70
Structure
1 distinct chain · 47% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nuclear pore complex protein NUP54 | protein | 510 | 47% helix, 11% strand | P70582 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 897 | 0.70 | 0.75 | 66 | empty |
Compared structures
- 3T97 · Molecular architecture of the transport channel of the nuclear pore complex: NUP62/NUP54 · an experimental structure of the same protein · chain A against B, TM-score 0.11
- 3T97 · Molecular Architecture of the Transport Channel of the Nuclear Pore Complex: Nup62/Nup54 · an experimental structure of the same protein · chain A against B, TM-score 0.11
- 3T98 · Molecular Architecture of the Transport Channel of the Nuclear Pore Complex: Nup54/Nup58 · an experimental structure of the same protein · chain A against A, TM-score 0.07
- 3T98 · Molecular architecture of the transport channel of the nuclear pore complex: NUP54/NUP58 · an experimental structure of the same protein · chain A against A, TM-score 0.07
- 4J3H · Ring cycle for dilating and constricting the nuclear pore: structure of a Nup54… · an experimental structure of the same protein · chain A against A, TM-score 0.07
- 4J3H · Ring cycle for dilating and constricting the nuclear pore: structure of a NUP54… · an experimental structure of the same protein · chain A against A, TM-score 0.07
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P70582
- Elsewhere: UniProt P70582 · AlphaFold DB P70582
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