Research workbench
AlphaFold monomer V2.0 prediction for NADH-quinone oxidoreductase subunit N (P0AFF0)
Analyse AlphaFold monomer V2.0 prediction for NADH-quinone oxidoreductase subunit N… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0AFF0
- Type
- protein
- Length
- 485 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xDb1dc029CbEA54B14AD64cbF96eB3BEcF10f3717
- Molecule
- NADH-quinone oxidoreductase subunit N
- UniProt
- P0AFF0
- Pockets
- 3 · best druggability 0.42
Structure
1 distinct chain · 78% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NADH-quinone oxidoreductase subunit N | protein | 485 | 78% helix, 2% strand | P0AFF0 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 139 | 0.42 | 0.74 | 18 | empty |
| 2 | 73 | 0.35 | 0.76 | 13 | empty |
| 3 | 63 | 0.31 | 0.75 | 16 | empty |
Compared structures
- 7NYH · Respiratory complex I from Escherichia coli - focused refinement of membrane arm · an experimental structure of the same protein · chain A against N, TM-score 0.94
- 7NYH · Respiratory complex I from escherichia COLI - focused refinement of membrane arm · an experimental structure of the same protein · chain A against N, TM-score 0.94
- 7NYV · Respiratory complex I from Escherichia coli - conformation 3 · an experimental structure of the same protein · chain A against N, TM-score 0.94
- 7NYV · Respiratory complex I from escherichia COLI - conformation 3 · an experimental structure of the same protein · chain A against N, TM-score 0.94
- 7NYU · Respiratory complex I from Escherichia coli - conformation 2 · an experimental structure of the same protein · chain A against N, TM-score 0.94
- 7NYR · Respiratory complex I from escherichia COLI - conformation 1 · an experimental structure of the same protein · chain A against N, TM-score 0.94
- 7NYR · Respiratory complex I from Escherichia coli - conformation 1 · an experimental structure of the same protein · chain A against N, TM-score 0.94
- 7NYU · Respiratory complex I from escherichia COLI - conformation 2 · an experimental structure of the same protein · chain A against N, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AFF0
- Elsewhere: UniProt P0AFF0 · AlphaFold DB P0AFF0
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