Research workbench
AlphaFold monomer V2.0 prediction for NADH-quinone oxidoreductase subunit M (P0AFE8)
Analyse AlphaFold monomer V2.0 prediction for NADH-quinone oxidoreductase subunit M… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0AFE8
- Type
- protein
- Length
- 509 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9188600a0FCa2914254C94299b1bd9721Bc4D500
- Molecule
- NADH-quinone oxidoreductase subunit M
- UniProt
- P0AFE8
- Pockets
- 2 · best druggability 0.57
Structure
1 distinct chain · 75% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NADH-quinone oxidoreductase subunit M | protein | 509 | 75% helix, 3% strand | P0AFE8 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 153 | 0.57 | 0.81 | 16 | empty |
| 2 | 57 | 0.32 | 0.75 | 12 | empty |
Compared structures
- 7NYV · Respiratory complex I from Escherichia coli - conformation 3 · an experimental structure of the same protein · chain A against M, TM-score 0.96
- 7NYV · Respiratory complex I from escherichia COLI - conformation 3 · an experimental structure of the same protein · chain A against M, TM-score 0.96
- 7NYU · Respiratory complex I from Escherichia coli - conformation 2 · an experimental structure of the same protein · chain A against M, TM-score 0.96
- 7NYU · Respiratory complex I from escherichia COLI - conformation 2 · an experimental structure of the same protein · chain A against M, TM-score 0.96
- 7NYH · Respiratory complex I from Escherichia coli - focused refinement of membrane arm · an experimental structure of the same protein · chain A against M, TM-score 0.96
- 7NYH · Respiratory complex I from escherichia COLI - focused refinement of membrane arm · an experimental structure of the same protein · chain A against M, TM-score 0.96
- 7NYR · Respiratory complex I from Escherichia coli - conformation 1 · an experimental structure of the same protein · chain A against M, TM-score 0.96
- 7NYR · Respiratory complex I from escherichia COLI - conformation 1 · an experimental structure of the same protein · chain A against M, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AFE8
- Elsewhere: UniProt P0AFE8 · AlphaFold DB P0AFE8
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