Research workbench
AlphaFold monomer V2.0 prediction for NADH-quinone oxidoreductase subunit D (Q5YWD0)
Analyse AlphaFold monomer V2.0 prediction for NADH-quinone oxidoreductase subunit D… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q5YWD0
- Type
- protein
- Length
- 453 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x045a1b77c52d845d6e7Ba6a444600C064C71354A
- Molecule
- NADH-quinone oxidoreductase subunit D
- UniProt
- Q5YWD0
- Pockets
- 6 · best druggability 0.71
Structure
1 distinct chain · 47% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NADH-quinone oxidoreductase subunit D | protein | 453 | 47% helix, 13% strand | Q5YWD0 |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 61 | 0.71 | 0.97 | 16 | empty |
| 2 | 117 | 0.43 | 0.77 | 22 | empty |
| 3 | 118 | 0.41 | 0.75 | 21 | empty |
| 4 | 88 | 0.34 | 0.74 | 13 | empty |
| 5 | 81 | 0.33 | 0.74 | 23 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5YWD0
- Elsewhere: UniProt Q5YWD0 · AlphaFold DB Q5YWD0
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