Research workbench
AlphaFold monomer V2.0 prediction for NADH-quinone oxidoreductase subunit C/D (P33599)
Analyse AlphaFold monomer V2.0 prediction for NADH-quinone oxidoreductase subunit C/D… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P33599
- Type
- protein
- Length
- 596 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9073C46348542FfE4327c3F363F9B51B22058e75
- Molecule
- NADH-quinone oxidoreductase subunit C/D
- UniProt
- P33599
- Pockets
- 7 · best druggability 0.60
Structure
1 distinct chain · 42% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NADH-quinone oxidoreductase subunit C/D | protein | 596 | 42% helix, 16% strand | P33599 |
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 171 | 0.60 | 0.83 | 25 | empty |
| 2 | 56 | 0.50 | 0.86 | 16 | empty |
| 3 | 156 | 0.49 | 0.78 | 19 | empty |
| 4 | 128 | 0.45 | 0.77 | 24 | empty |
| 5 | 146 | 0.43 | 0.75 | 26 | empty |
Compared structures
- 7NYR · Respiratory complex I from Escherichia coli - conformation 1 · an experimental structure of the same protein · chain A against D, TM-score 0.96
- 7NYR · Respiratory complex I from escherichia COLI - conformation 1 · an experimental structure of the same protein · chain A against D, TM-score 0.96
- 7NYV · Respiratory complex I from escherichia COLI - conformation 3 · an experimental structure of the same protein · chain A against D, TM-score 0.95
- 7NYV · Respiratory complex I from Escherichia coli - conformation 3 · an experimental structure of the same protein · chain A against D, TM-score 0.95
- 7NYU · Respiratory complex I from Escherichia coli - conformation 2 · an experimental structure of the same protein · chain A against D, TM-score 0.95
- 7NYU · Respiratory complex I from escherichia COLI - conformation 2 · an experimental structure of the same protein · chain A against D, TM-score 0.95
- 7NZ1 · Respiratory complex I from escherichia COLI - focused refinement of cytoplasmic arm · an experimental structure of the same protein · chain A against D, TM-score 0.94
- 7NZ1 · Respiratory complex I from Escherichia coli - focused refinement of cytoplasmic arm · an experimental structure of the same protein · chain A against D, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P33599
- Elsewhere: UniProt P33599 · AlphaFold DB P33599
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