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AlphaFold monomer V2.0 prediction for NADH-ubiquinone oxidoreductase chain 2 (Q9B6C8)

Analyse AlphaFold monomer V2.0 prediction for NADH-ubiquinone oxidoreductase chain 2… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q9B6C8
Type: protein
Length: 469 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x0D671490EE06E75975e90D7F99F73B20BE618744
Molecule: NADH-ubiquinone oxidoreductase chain 2
UniProt: Q9B6C8
Pockets: 7 · best druggability 0.61

Structure

1 distinct chain · 76% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	NADH-ubiquinone oxidoreductase chain 2	protein	469	76% helix, 2% strand	Q9B6C8

Pockets

7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	348	0.61	0.77	32	empty
2	223	0.56	0.78	28	empty
3	168	0.50	0.77	16	empty
4	60	0.46	0.83	12	empty
5	123	0.41	0.75	23	empty

Compared structures

6GCS · Cryo-EM structure of respiratory complex I from yarrowia lipolytica · an experimental structure of the same protein · chain A against 2, TM-score 0.93
6GCS · Cryo-EM structure of respiratory complex I from Yarrowia lipolytica · an experimental structure of the same protein · chain A against 2, TM-score 0.93
6H8K · Crystal structure of a variant (Q133C in PSST) of Yarrowia lipolytica complex I · an experimental structure of the same protein · chain A against 2, TM-score 0.90

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9B6C8
Elsewhere: UniProt Q9B6C8 · AlphaFold DB Q9B6C8

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