Research workbench
AlphaFold monomer V2.0 prediction for NADH-ubiquinone oxidoreductase chain 2 (P03896)
Analyse AlphaFold monomer V2.0 prediction for NADH-ubiquinone oxidoreductase chain 2… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P03896
- Type
- protein
- Length
- 341 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xf4ED13986579E8e227b3ED6c02276c648754EC27
- Molecule
- NADH-ubiquinone oxidoreductase chain 2
- UniProt
- P03896
- Pockets
- 2 · best druggability 0.42
Structure
1 distinct chain · 77% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NADH-ubiquinone oxidoreductase chain 2 | protein | 341 | 77% helix, 1% strand | P03896 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 75 | 0.42 | 0.79 | 15 | empty |
| 2 | 72 | 0.39 | 0.78 | 11 | empty |
Compared structures
- 8B9Z · Drosophila melanogaster complex I in the Active state (Dm1) · an experimental structure of the same protein · chain A against N, TM-score 0.94
- 8ESZ · Structure of mitochondrial complex I from Drosophila melanogaster, Helix-locked state · an experimental structure of the same protein · chain A against 2, TM-score 0.93
- 8ESW · Structure of mitochondrial complex I from Drosophila melanogaster, Flexible-class 1 · an experimental structure of the same protein · chain A against 2, TM-score 0.93
- 8BA0 · Drosophila melanogaster complex I in the Twisted state (Dm2) · an experimental structure of the same protein · chain A against N, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03896
- Elsewhere: UniProt P03896 · AlphaFold DB P03896
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