Research workbench
AlphaFold monomer V2.0 prediction for non-structural maintenance of chromosome element 4 (P43124)
Analyse AlphaFold monomer V2.0 prediction for non-structural maintenance of chromosome… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P43124
- Type
- protein
- Length
- 402 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x380F4C021CE17d70f3CC9D2B58C6c7D60cC516CA
- Molecule
- Non-structural maintenance of chromosome element 4
- UniProt
- P43124
- Pockets
- 5 · best druggability 0.50
Structure
1 distinct chain · 50% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Non-structural maintenance of chromosome element 4 | protein | 402 | 50% helix, 3% strand | P43124 |
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 152 | 0.50 | 0.78 | 21 | empty |
| 2 | 67 | 0.43 | 0.81 | 11 | empty |
| 3 | 87 | 0.40 | 0.77 | 17 | empty |
| 4 | 69 | 0.32 | 0.75 | 15 | empty |
| 5 | 62 | 0.27 | 0.72 | 13 | empty |
Compared structures
- 7QCD · CryoEM structure of the Smc5/6-holocomplex (composite structure) · an experimental structure of the same protein · chain A against F, TM-score 0.34
- 7TVE · ATP and DNA bound SMC5/6 core complex · an experimental structure of the same protein · chain A against G, TM-score 0.27
- 7TVE · ATP and DNA bound SMC5/6 core complex · an experimental structure of the same protein · chain A against G, TM-score 0.27
- 8T8F · Smc5/6 8mer · an experimental structure of the same protein · chain A against G, TM-score 0.26
- 8HQS · Cryo-EM structure of 8-subunit Smc5/6 head region · an experimental structure of the same protein · chain A against H, TM-score 0.21
- 7YMD · Cryo-EM structure of Nse1/3/4 · an experimental structure of the same protein · chain A against A, TM-score 0.09
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P43124
- Elsewhere: UniProt P43124 · AlphaFold DB P43124
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