Research workbench
AlphaFold monomer V2.0 prediction for na(+)-translocating NADH- quinone reductase subunit a (Q9KPS1)
Analyse AlphaFold monomer V2.0 prediction for na(+)-translocating NADH- quinone… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9KPS1
- Type
- protein
- Length
- 446 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xdF2b063d4B94F3f46D117B1af99A846bD4a59284
- Molecule
- Na(+)-translocating NADH-quinone reductase subunit a
- UniProt
- Q9KPS1
- Pockets
- 5 · best druggability 0.81
Structure
1 distinct chain · 28% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Na(+)-translocating NADH-quinone reductase subunit a | protein | 446 | 28% helix, 24% strand | Q9KPS1 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 977 | 0.81 | 0.82 | 94 | empty |
| 2 | 72 | 0.41 | 0.79 | 26 | empty |
| 3 | 111 | 0.40 | 0.76 | 23 | empty |
| 4 | 79 | 0.32 | 0.74 | 17 | empty |
| 5 | 64 | 0.28 | 0.73 | 17 | empty |
Compared structures
- 8EVU · Cryo EM structure of Vibrio cholerae NQR · an experimental structure of the same protein · chain A against A, TM-score 1.00
- 8A1U · Sodium pumping NADH-qui oxidoreductase with substrates NADH and Q2 · an experimental structure of the same protein · chain A against A, TM-score 1.00
- 4P6V · Crystal structure of the na+-translocating NADH: ubiquinone oxidoreductase from vibrio… · an experimental structure of the same protein · chain A against A, TM-score 0.89
- 4U9Q · Crystal structure of nqra in spacegroup P21 · an experimental structure of the same protein · chain A against A, TM-score 0.68
- 4U9Q · Crystal structure of NqrA in spacegroup P21 · an experimental structure of the same protein · chain A against A, TM-score 0.68
- 4U9O · Crystal structure of NqrA from Vibrio cholerae · an experimental structure of the same protein · chain A against A, TM-score 0.67
- 4U9O · Crystal structure of nqra from vibrio cholerae · an experimental structure of the same protein · chain A against A, TM-score 0.67
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KPS1
- Elsewhere: UniProt Q9KPS1 · AlphaFold DB Q9KPS1
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