Research workbench
AlphaFold monomer V2.0 prediction for na(+)-translocating NADH- quinone reductase subunit a (A5F5X1)
Analyse AlphaFold monomer V2.0 prediction for na(+)-translocating NADH- quinone… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A5F5X1
- Type
- protein
- Length
- 446 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xBeB220F0B5b0C48F46B5DDd3E3b071BC0827f8D6
- Molecule
- Na(+)-translocating NADH-quinone reductase subunit a
- UniProt
- A5F5X1
- Pockets
- 5 · best druggability 0.79
Structure
1 distinct chain · 28% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Na(+)-translocating NADH-quinone reductase subunit a | protein | 446 | 28% helix, 24% strand | A5F5X1 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1138 | 0.79 | 0.80 | 97 | empty |
| 2 | 109 | 0.40 | 0.76 | 25 | empty |
| 3 | 85 | 0.37 | 0.76 | 23 | empty |
| 4 | 97 | 0.33 | 0.73 | 15 | empty |
| 5 | 71 | 0.28 | 0.73 | 19 | empty |
Compared structures
- 7XK7 · Cryo-EM structure of Na+-pumping NADH-ubiqui oxidoreductase from Vibrio cholerae, with… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 7XK7 · Cryo-EM structure of na+-pumping NADH-ubiquinone oxidoreductase from vibrio cholerae… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 7XK5 · Cryo-EM structure of Na+-pumping NADH-ubiqui oxidoreductase from Vibrio cholerae, state 3 · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 7XK5 · Cryo-EM structure of na+-pumping NADH-ubiquinone oxidoreductase from vibrio cholerae… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 7XK4 · Cryo-EM structure of na+-pumping NADH-ubiquinone oxidoreductase from vibrio cholerae… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 7XK4 · Cryo-EM structure of Na+-pumping NADH-ubiqui oxidoreductase from Vibrio cholerae, state 2 · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 7XK3 · Cryo-EM structure of Na+-pumping NADH-ubiqui oxidoreductase from Vibrio cholerae, state 1 · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 7XK3 · Cryo-EM structure of na+-pumping NADH-ubiquinone oxidoreductase from vibrio cholerae… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 7XK6 · Cryo-EM structure of na+-pumping NADH-ubiquinone oxidoreductase from vibrio cholerae… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 7XK6 · Cryo-EM structure of Na+-pumping NADH-ubiqui oxidoreductase from Vibrio cholerae, with… · an experimental structure of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A5F5X1
- Elsewhere: UniProt A5F5X1 · AlphaFold DB A5F5X1
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.