Research workbench
AlphaFold monomer V2.0 prediction for effector protein nopp (P55724)
Analyse AlphaFold monomer V2.0 prediction for effector protein nopp (P55724) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P55724
- Type
- protein
- Length
- 271 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x6b58efD144f1966f7848B5a8d2B96b73fc181639
- Molecule
- Effector protein nopp
- UniProt
- P55724
- Pockets
- 4 · best druggability 0.68
Structure
1 distinct chain · 33% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Effector protein nopp | protein | 271 | 33% helix, 21% strand | P55724 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 238 | 0.68 | 0.85 | 22 | empty |
| 2 | 546 | 0.66 | 0.76 | 44 | empty |
| 3 | 81 | 0.36 | 0.77 | 21 | empty |
| 4 | 81 | 0.33 | 0.74 | 14 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P55724
- Elsewhere: UniProt P55724 · AlphaFold DB P55724
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