Research workbench
AlphaFold monomer V2.0 prediction for ribosome biogenesis protein NOP53 (Q9NZM5)
Analyse AlphaFold monomer V2.0 prediction for ribosome biogenesis protein NOP53 (Q9NZM5) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9NZM5
- Type
- protein
- Length
- 478 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5F44328A27457eA9cB313ce81Efc1023D2D1BB41
- Molecule
- Ribosome biogenesis protein NOP53
- UniProt
- Q9NZM5
- Pockets
- 2 · best druggability 0.43
Structure
1 distinct chain · 42% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosome biogenesis protein NOP53 | protein | 478 | 42% helix, 0% strand | Q9NZM5 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 161 | 0.43 | 0.75 | 28 | empty |
| 2 | 85 | 0.40 | 0.78 | 16 | empty |
Compared structures
- 8FL2 · Human nuclear pre-60S ribosomal subunit (State I1) · an experimental structure of the same protein · chain A against NL, TM-score 0.35
- 8FL3 · Human nuclear pre-60S ribosomal subunit (State I2) · an experimental structure of the same protein · chain A against NL, TM-score 0.35
- 8FL4 · Human nuclear pre-60S ribosomal subunit (State I3) · an experimental structure of the same protein · chain A against NL, TM-score 0.35
- 8FLD · Human nuclear pre-60S ribosomal subunit (State L1) · an experimental structure of the same protein · chain A against NL, TM-score 0.35
- 8FLA · Human nuclear pre-60S ribosomal subunit (State K1) · an experimental structure of the same protein · chain A against NL, TM-score 0.35
- 8FL6 · Human nuclear pre-60S ribosomal subunit (State J1) · an experimental structure of the same protein · chain A against NL, TM-score 0.34
- 8FKZ · Human nucleolar pre-60S ribosomal subunit (State G) · an experimental structure of the same protein · chain A against NL, TM-score 0.34
- 8FLE · Human nuclear pre-60S ribosomal subunit (State L2) · an experimental structure of the same protein · chain A against NL, TM-score 0.34
- 8INF · human nuclear pre-60S ribosomal particle - State F' · an experimental structure of the same protein · chain A against w, TM-score 0.34
- 8FL7 · Human nuclear pre-60S ribosomal subunit (State J2) · an experimental structure of the same protein · chain A against NL, TM-score 0.34
- 8FLB · Human nuclear pre-60S ribosomal subunit (State K2) · an experimental structure of the same protein · chain A against NL, TM-score 0.34
- 8INE · human nuclear pre-60S ribosomal particle - State G' · an experimental structure of the same protein · chain A against w, TM-score 0.34
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NZM5
- Elsewhere: UniProt Q9NZM5 · AlphaFold DB Q9NZM5
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