Research workbench
AlphaFold monomer V2.0 prediction for nodulation protein D (P04682)
Analyse AlphaFold monomer V2.0 prediction for nodulation protein D (P04682) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P04682
- Type
- protein
- Length
- 338 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x1a43F95a36d4F45EFC67b40D463609Cf81b3b63f
- Molecule
- Nodulation protein D
- UniProt
- P04682
- Pockets
- 4 · best druggability 0.69
Structure
1 distinct chain · 42% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nodulation protein D | protein | 338 | 42% helix, 20% strand | P04682 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 228 | 0.69 | 0.85 | 36 | empty |
| 2 | 152 | 0.42 | 0.75 | 24 | empty |
| 3 | 55 | 0.35 | 0.79 | 11 | empty |
| 4 | 65 | 0.30 | 0.74 | 12 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04682
- Elsewhere: UniProt P04682 · AlphaFold DB P04682
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