Research workbench
AlphaFold monomer V2.0 prediction for nodulation protein D 2 (P12233)
Analyse AlphaFold monomer V2.0 prediction for nodulation protein D 2 (P12233) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P12233
- Type
- protein
- Length
- 312 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xaa53776A41fB2e67da75A96E8a53746b6874aAB4
- Molecule
- Nodulation protein D 2
- UniProt
- P12233
- Pockets
- 3 · best druggability 0.67
Structure
1 distinct chain · 43% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nodulation protein D 2 | protein | 312 | 43% helix, 22% strand | P12233 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 142 | 0.67 | 0.88 | 23 | empty |
| 2 | 189 | 0.44 | 0.74 | 21 | empty |
| 3 | 51 | 0.24 | 0.73 | 9 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P12233
- Elsewhere: UniProt P12233 · AlphaFold DB P12233
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