Research workbench
AlphaFold monomer V2.0 prediction for nodulation protein D 1 (P03031)
Analyse AlphaFold monomer V2.0 prediction for nodulation protein D 1 (P03031) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P03031
- Type
- protein
- Length
- 308 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x6Ed09D80e98fE15DE51C9E7a8896AbF1f2365C3e
- Molecule
- Nodulation protein D 1
- UniProt
- P03031
- Pockets
- 4 · best druggability 0.64
Structure
1 distinct chain · 45% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nodulation protein D 1 | protein | 308 | 45% helix, 22% strand | P03031 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 113 | 0.64 | 0.87 | 23 | empty |
| 2 | 199 | 0.52 | 0.77 | 33 | empty |
| 3 | 242 | 0.50 | 0.75 | 33 | empty |
| 4 | 58 | 0.40 | 0.82 | 12 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03031
- Elsewhere: UniProt P03031 · AlphaFold DB P03031
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