Research workbench
AlphaFold monomer V2.0 prediction for nodal homolog 3-a (Q800C0)
Analyse AlphaFold monomer V2.0 prediction for nodal homolog 3-a (Q800C0) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q800C0
- Type
- protein
- Length
- 401 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x661f92Fc5950020C7aB410B5F5b9a3f429F49Ae5
- Molecule
- Nodal homolog 3-a
- UniProt
- Q800C0
- Pockets
- 7 · best druggability 0.56
Structure
1 distinct chain · 19% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nodal homolog 3-a | protein | 401 | 19% helix, 28% strand | Q800C0 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 217 | 0.56 | 0.78 | 24 | empty |
| 2 | 297 | 0.54 | 0.75 | 27 | empty |
| 3 | 142 | 0.51 | 0.79 | 27 | empty |
| 4 | 211 | 0.48 | 0.75 | 29 | empty |
| 5 | 182 | 0.47 | 0.75 | 21 | empty |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q800C0
- Elsewhere: UniProt Q800C0 · AlphaFold DB Q800C0
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