Research workbench
AlphaFold monomer V2.0 prediction for nucleolar complex protein 2 (P39744)
Analyse AlphaFold monomer V2.0 prediction for nucleolar complex protein 2 (P39744) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P39744
- Type
- protein
- Length
- 710 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7FDF8b382C6a36A8772D1A265E8e480c7DF0A9C1
- Molecule
- Nucleolar complex protein 2
- UniProt
- P39744
- Pockets
- 6 · best druggability 0.69
Structure
1 distinct chain · 63% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleolar complex protein 2 | protein | 710 | 63% helix, 2% strand | P39744 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 622 | 0.69 | 0.77 | 55 | empty |
| 2 | 752 | 0.67 | 0.75 | 62 | empty |
| 3 | 366 | 0.60 | 0.77 | 45 | empty |
| 4 | 178 | 0.45 | 0.74 | 21 | empty |
| 5 | 145 | 0.41 | 0.74 | 14 | empty |
Compared structures
- 8V87 · 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map) · an experimental structure of the same protein · chain A against 8, TM-score 0.55
- 7R6K · State E2 nucleolar 60S ribosomal intermediate - Model for Noc2/Noc3 region · an experimental structure of the same protein · chain A against 8, TM-score 0.54
- 7R7A · State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model · an experimental structure of the same protein · chain A against 8, TM-score 0.53
- 7R72 · State E1 nucleolar 60S ribosome biogenesis intermediate - Spb4 local model · an experimental structure of the same protein · chain A against 8, TM-score 0.05
- 7NAF · State E2 nucleolar 60S ribosomal biogenesis intermediate - Spb1-MTD local model · an experimental structure of the same protein · chain A against 8, TM-score 0.05
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P39744
- Elsewhere: UniProt P39744 · AlphaFold DB P39744
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