Research workbench
AlphaFold monomer V2.0 prediction for nucleolar complex protein 2 homolog (Q9Y3T9)
Analyse AlphaFold monomer V2.0 prediction for nucleolar complex protein 2 homolog… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9Y3T9
- Type
- protein
- Length
- 749 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd10960F956646DE8b64d3598984c91C2d5Af3D7b
- Molecule
- Nucleolar complex protein 2 homolog
- UniProt
- Q9Y3T9
- Pockets
- 5 · best druggability 0.72
Structure
1 distinct chain · 58% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleolar complex protein 2 homolog | protein | 749 | 58% helix, 1% strand | Q9Y3T9 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 954 | 0.72 | 0.76 | 69 | empty |
| 2 | 675 | 0.70 | 0.77 | 57 | empty |
| 3 | 112 | 0.45 | 0.78 | 23 | empty |
| 4 | 61 | 0.32 | 0.76 | 15 | empty |
| 5 | 72 | 0.30 | 0.73 | 12 | empty |
Compared structures
- 8FKW · Human nucleolar pre-60S ribosomal subunit (State D2) · an experimental structure of the same protein · chain A against NA, TM-score 0.63
- 8FKV · Human nucleolar pre-60S ribosomal subunit (State D1) · an experimental structure of the same protein · chain A against NA, TM-score 0.63
- 8FKX · Human nucleolar pre-60S ribosomal subunit (State E) · an experimental structure of the same protein · chain A against NA, TM-score 0.63
- 8FKY · Human nucleolar pre-60S ribosomal subunit (State F) · an experimental structure of the same protein · chain A against NA, TM-score 0.63
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y3T9
- Elsewhere: UniProt Q9Y3T9 · AlphaFold DB Q9Y3T9
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