Research workbench

AlphaFold monomer V2.0 prediction for 60S ribosomal export protein NMD3 (Q96D46)

Analyse AlphaFold monomer V2.0 prediction for 60S ribosomal export protein NMD3 (Q96D46) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q96D46
Type: protein
Length: 503 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x71112d4fF7ebb3b617963c05f052289e073082FD
Molecule: 60S ribosomal export protein NMD3
UniProt: Q96D46
Pockets: 7 · best druggability 0.68

Structure

1 distinct chain · 24% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	60S ribosomal export protein NMD3	protein	503	24% helix, 33% strand	Q96D46

Pockets

7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	186	0.68	0.87	32	empty
2	299	0.62	0.80	31	empty
3	161	0.60	0.83	27	empty
4	157	0.57	0.82	29	empty
5	82	0.41	0.78	20	empty

Compared structures

6LSR · Cryo-EM structure of a pre-60S ribosomal subunit - state B · an experimental structure of the same protein · chain A against 3, TM-score 0.50
6LQM · Cryo-EM structure of a pre-60S ribosomal subunit - state C · an experimental structure of the same protein · chain A against 3, TM-score 0.50
6LU8 · Cryo-EM structure of a human pre-60S ribosomal subunit - state A · an experimental structure of the same protein · chain A against 3, TM-score 0.47

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q96D46
Elsewhere: UniProt Q96D46 · AlphaFold DB Q96D46

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