Research workbench

AlphaFold monomer V2.0 prediction for effector protein nlef (Q8XAL7)

Analyse AlphaFold monomer V2.0 prediction for effector protein nlef (Q8XAL7) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q8XAL7
Type: protein
Length: 189 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xf87a97E0A4bB354D834857B14296240B167cbe70
Molecule: Effector protein nlef
UniProt: Q8XAL7
Pockets: 5 · best druggability 0.55

Structure

1 distinct chain · 46% helix, 5% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Effector protein nlef	protein	189	46% helix, 5% strand	Q8XAL7

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	193	0.55	0.79	24	empty
2	196	0.50	0.76	17	empty
3	112	0.37	0.74	22	empty
4	66	0.35	0.77	17	empty
5	71	0.32	0.75	13	empty

Compared structures

3V3K · Human caspase 9 in complex with bacterial effector protein · an experimental structure of the same protein · chain A against B, TM-score 0.86
3V3K · Human caspase 9 in complex with bacterial effector protein · an experimental structure of the same protein · chain A against B, TM-score 0.86

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8XAL7
Elsewhere: UniProt Q8XAL7 · AlphaFold DB Q8XAL7

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