Research workbench
AlphaFold monomer V2.0 prediction for nacht, lrr and pyd domains- containing protein 1 allele 2 (D9I2G3)
Analyse AlphaFold monomer V2.0 prediction for nacht, lrr and pyd domains- containing… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- D9I2G3
- Type
- protein
- Length
- 1,218 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x1f58318E3C996f6a8937e4709e93051027111758
- Molecule
- Nacht, lrr and pyd domains-containing protein 1 allele 2
- UniProt
- D9I2G3
- Pockets
- 20 · best druggability 0.80
Structure
1 distinct chain · 30% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nacht, lrr and pyd domains-containing protein 1 allele 2 | protein | 1218 | 30% helix, 18% strand | D9I2G3 |
Pockets
20 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 774 | 0.80 | 0.83 | 73 | empty |
| 2 | 970 | 0.78 | 0.80 | 80 | empty |
| 3 | 831 | 0.78 | 0.81 | 98 | empty |
| 4 | 148 | 0.69 | 0.90 | 27 | empty |
| 5 | 61 | 0.57 | 0.90 | 19 | empty |
Compared structures
- 7CRW · Cryo-EM structure of RNLRP1-RDPP9 complex · an experimental structure of the same protein · chain A against A, TM-score 0.22
- 7CRW · Cryo-EM structure of rNLRP1-rDPP9 complex · an experimental structure of the same protein · chain A against A, TM-score 0.22
- 7CRV · Crystal structure of RNLRP1-fiind · an experimental structure of the same protein · chain A against D, TM-score 0.12
- 7CRV · Crystal structure of rNLRP1-FIIND · an experimental structure of the same protein · chain A against D, TM-score 0.12
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D9I2G3
- Elsewhere: UniProt D9I2G3 · AlphaFold DB D9I2G3
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