Research workbench
AlphaFold monomer V2.0 prediction for nigrin B (P33183)
Analyse AlphaFold monomer V2.0 prediction for nigrin B (P33183) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P33183
- Type
- protein
- Length
- 563 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x92f96107f8fA08E20b96ef0480Fa095378eF082F
- Molecule
- Nigrin B
- UniProt
- P33183
- Pockets
- 6 · best druggability 0.73
Structure
1 distinct chain · 29% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nigrin B | protein | 563 | 29% helix, 28% strand | P33183 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 316 | 0.73 | 0.85 | 46 | empty |
| 2 | 277 | 0.63 | 0.81 | 40 | empty |
| 3 | 130 | 0.41 | 0.75 | 25 | empty |
| 4 | 102 | 0.39 | 0.76 | 20 | empty |
| 5 | 76 | 0.33 | 0.75 | 19 | empty |
Modifications
Observed in the structure: 5 disulfide (disulfide).
Compared structures
- 3CA6 · Sambucus nigra agglutinin II (sna-II)- tetragonal crystal form- complexed to tn antigen · an experimental structure of the same protein · chain A against A, TM-score 0.46
- 3CA6 · Sambucus nigra agglutinin II (SNA-II)- tetragonal crystal form- complexed to Tn antigen · an experimental structure of the same protein · chain A against A, TM-score 0.46
- 3C9Z · Sambucus nigra agglutinin II (sna-II), tetragonal crystal form · an experimental structure of the same protein · chain A against A, TM-score 0.46
- 3C9Z · Sambucus nigra agglutinin II (SNA-II), tetragonal crystal form · an experimental structure of the same protein · chain A against A, TM-score 0.46
- 3CA5 · Crystal structure of sambucus nigra agglutinin II (sna-II)-tetragonal crystal form… · an experimental structure of the same protein · chain A against A, TM-score 0.46
- 3CA5 · Crystal structure of Sambucus nigra agglutinin II (SNA-II)-tetragonal crystal form… · an experimental structure of the same protein · chain A against A, TM-score 0.46
- 3CAH · Sambucus nigra aggutinin II. tetragonal crystal form- complexed to fucose · an experimental structure of the same protein · chain A against A, TM-score 0.46
- 3CAH · Sambucus nigra aggutinin II. tetragonal crystal form- complexed to fucose · an experimental structure of the same protein · chain A against A, TM-score 0.46
- 3CA3 · Crystal structure of Sambucus Nigra Agglutinin II (SNA-II)-tetragonal crystal form… · an experimental structure of the same protein · chain A against A, TM-score 0.46
- 3CA3 · Crystal structure of sambucus nigra agglutinin II (sna-II)-tetragonal crystal form… · an experimental structure of the same protein · chain A against A, TM-score 0.46
- 3CA1 · Sambucus nigra agglutinin II (SNA-II)- tetragonal crystal form- complexed to galactose · an experimental structure of the same protein · chain A against A, TM-score 0.46
- 3CA1 · Sambucus nigra agglutinin II (sna-II)- tetragonal crystal form- complexed to galactose · an experimental structure of the same protein · chain A against A, TM-score 0.46
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P33183
- Elsewhere: UniProt P33183 · AlphaFold DB P33183
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