Research workbench
AlphaFold monomer V2.0 prediction for nidogen-2 (O88322)
Analyse AlphaFold monomer V2.0 prediction for nidogen-2 (O88322) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O88322
- Type
- protein
- Length
- 1,403 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xDb1dc029CbEA54B14AD64cbF96eB3BEcF10f3717
- Molecule
- Nidogen-2
- UniProt
- O88322
- Pockets
- 11 · best druggability 0.78
Structure
1 distinct chain · 8% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nidogen-2 | protein | 1403 | 8% helix, 33% strand | O88322 |
Pockets
11 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 308 | 0.78 | 0.89 | 47 | empty |
| 2 | 641 | 0.69 | 0.78 | 55 | empty |
| 3 | 460 | 0.63 | 0.77 | 37 | empty |
| 4 | 152 | 0.50 | 0.79 | 24 | empty |
| 5 | 127 | 0.43 | 0.77 | 19 | empty |
Modifications
Observed in the structure: 24 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O88322
- Elsewhere: UniProt O88322 · AlphaFold DB O88322
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