Research workbench
AlphaFold monomer V2.0 prediction for nucleoporin NIC96 (P34077)
Analyse AlphaFold monomer V2.0 prediction for nucleoporin NIC96 (P34077) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P34077
- Type
- protein
- Length
- 839 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xBF0D2e107Ce1EcD2C4369B042274201DB719AaAF
- Molecule
- Nucleoporin NIC96
- UniProt
- P34077
- Pockets
- 9 · best druggability 0.62
Structure
1 distinct chain · 63% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoporin NIC96 | protein | 839 | 63% helix, 1% strand | P34077 |
Pockets
9 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 279 | 0.62 | 0.80 | 29 | empty |
| 2 | 199 | 0.58 | 0.80 | 30 | empty |
| 3 | 97 | 0.49 | 0.81 | 21 | empty |
| 4 | 286 | 0.48 | 0.73 | 36 | empty |
| 5 | 76 | 0.44 | 0.81 | 15 | empty |
Compared structures
- 7WOT · Cryo-EM structure of the inner ring monomer of the Saccharomyces cerevisiae nuclear pore… · an experimental structure of the same protein · chain A against A, TM-score 0.77
- 7WOO · Cryo-EM structure of the inner ring protomer of the saccharomyces cerevisiae nuclear pore… · an experimental structure of the same protein · chain A against A, TM-score 0.77
- 7WOO · Cryo-EM structure of the inner ring protomer of the Saccharomyces cerevisiae nuclear pore… · an experimental structure of the same protein · chain A against A, TM-score 0.77
- 8TJ5 · Inner spoke ring of the yeast NPC · an experimental structure of the same protein · chain A against S, TM-score 0.73
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P34077
- Elsewhere: UniProt P34077 · AlphaFold DB P34077
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