Research workbench
AlphaFold monomer V2.0 prediction for nuclear factor nf-kappa-B P100 subunit (Q9WTK5)
Analyse AlphaFold monomer V2.0 prediction for nuclear factor nf-kappa-B P100 subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9WTK5
- Type
- protein
- Length
- 899 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xAa9dfA3b561daFBbf7989Ffd418937f79dC2347c
- Molecule
- Nuclear factor nf-kappa-B P100 subunit
- UniProt
- Q9WTK5
- Pockets
- 2 · best druggability 0.58
Structure
1 distinct chain · 31% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nuclear factor nf-kappa-B P100 subunit | protein | 899 | 31% helix, 12% strand | Q9WTK5 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 196 | 0.58 | 0.81 | 25 | empty |
| 2 | 100 | 0.31 | 0.72 | 17 | empty |
Compared structures
- 3JV6 · Crystal structure of the dimerization domains P52 and relb · an experimental structure of the same protein · chain A against B, TM-score 0.12
- 3JV6 · Crystal structure of the dimerization domains p52 and RelB · an experimental structure of the same protein · chain A against B, TM-score 0.12
- 3JV5 · Crystal structure of the dimerization domains P52 homodimer · an experimental structure of the same protein · chain A against A, TM-score 0.12
- 3JV5 · Crystal structure of the dimerization domains p52 homodimer · an experimental structure of the same protein · chain A against A, TM-score 0.12
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WTK5
- Elsewhere: UniProt Q9WTK5 · AlphaFold DB Q9WTK5
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