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AlphaFold monomer V2.0 prediction for [nu+] prion formation protein 1 (Q08972)

Analyse AlphaFold monomer V2.0 prediction for [nu+] prion formation protein 1 (Q08972) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q08972
Type: protein
Length: 1,196 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xF4EC0fe53C43EE0EE04DB57DdD18d2d638Dd380A
Molecule: [nu+] prion formation protein 1
UniProt: Q08972
Pockets: 16 · best druggability 0.82

Structure

1 distinct chain · 45% helix, 12% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	[nu+] prion formation protein 1	protein	1196	45% helix, 12% strand	Q08972

Pockets

16 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	975	0.82	0.84	118	empty
2	199	0.61	0.83	27	empty
3	255	0.57	0.78	24	empty
4	237	0.57	0.79	31	empty
5	217	0.53	0.78	29	empty

Compared structures

6S47 · Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1 · an experimental structure of the same protein · chain A against Bi, TM-score 0.78

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q08972
Elsewhere: UniProt Q08972 · AlphaFold DB Q08972

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