Research workbench
AlphaFold monomer V2.0 prediction for ribosomal RNA small subunit methyltransferase NEP1 (Q9W4J5)
Analyse AlphaFold monomer V2.0 prediction for ribosomal RNA small subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9W4J5
- Type
- protein
- Length
- 252 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x0D671490EE06E75975e90D7F99F73B20BE618744
- Molecule
- Ribosomal RNA small subunit methyltransferase NEP1
- UniProt
- Q9W4J5
- Pockets
- 3 · best druggability 0.58
Structure
1 distinct chain · 28% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal RNA small subunit methyltransferase NEP1 | protein | 252 | 28% helix, 23% strand | Q9W4J5 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 162 | 0.58 | 0.82 | 26 | empty |
| 2 | 265 | 0.55 | 0.77 | 32 | empty |
| 3 | 121 | 0.42 | 0.76 | 20 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9W4J5
- Elsewhere: UniProt Q9W4J5 · AlphaFold DB Q9W4J5
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