Research workbench
AlphaFold monomer V2.0 prediction for ribosomal RNA small subunit methyltransferase NEP1 (O29524)
Analyse AlphaFold monomer V2.0 prediction for ribosomal RNA small subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O29524
- Type
- protein
- Length
- 219 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xfEbB23e5889f981c58b0c3A97247348dB3e08418
- Molecule
- Ribosomal RNA small subunit methyltransferase NEP1
- UniProt
- O29524
- Pockets
- 1 · best druggability 0.64
Structure
1 distinct chain · 40% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal RNA small subunit methyltransferase NEP1 | protein | 219 | 40% helix, 23% strand | O29524 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 193 | 0.64 | 0.84 | 30 | empty |
Compared structures
- 3O7B · Crystal structure of Archaeoglobus Fulgidus Nep1 bound to S-adenosylhomocysteine · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 3O7B · Crystal structure of archaeoglobus fulgidus NEP1 bound to S- adenosylhomocysteine · an experimental structure of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O29524
- Elsewhere: UniProt O29524 · AlphaFold DB O29524
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