Research workbench
AlphaFold monomer V2.0 prediction for SERINE/THREONINE-protein kinase NEK1 (Q96PY6)
Analyse AlphaFold monomer V2.0 prediction for SERINE/THREONINE-protein kinase NEK1… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q96PY6
- Type
- protein
- Length
- 1,258 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xa73BAb1DabE4333A884D03393eAa10c3B4215494
- Molecule
- SERINE/THREONINE-protein kinase NEK1
- UniProt
- Q96PY6
- Pockets
- 3 · best druggability 0.78
Structure
1 distinct chain · 40% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SERINE/THREONINE-protein kinase NEK1 | protein | 1258 | 40% helix, 4% strand | Q96PY6 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 807 | 0.78 | 0.82 | 74 | empty |
| 2 | 55 | 0.51 | 0.87 | 14 | empty |
| 3 | 61 | 0.27 | 0.72 | 11 | empty |
Compared structures
- 4B9D · Crystal Structure of Human NIMA-related Kinase 1 (NEK1) with inhibitor. · an experimental structure of the same protein · chain A against B, TM-score 0.22
- 4B9D · Crystal structure of human nima-related kinase 1 (NEK1) with inhibitor. · an experimental structure of the same protein · chain A against B, TM-score 0.22
- 4APC · Crystal structure of human nima-related kinase 1 (NEK1) · an experimental structure of the same protein · chain A against B, TM-score 0.22
- 4APC · Crystal Structure of Human NIMA-related Kinase 1 (NEK1) · an experimental structure of the same protein · chain A against B, TM-score 0.22
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96PY6
- Elsewhere: UniProt Q96PY6 · AlphaFold DB Q96PY6
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