Research workbench
AlphaFold monomer V2.0 prediction for beta-(1-->2)GLUCAN export ATP- BINDING/PERMEASE protein ndva (Q2YQ73)
Analyse AlphaFold monomer V2.0 prediction for beta-(1-->2)GLUCAN export ATP… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q2YQ73
- Type
- protein
- Length
- 599 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xf5B717d8E59F0FadCa8F29c51b9fa739CaB6ecd2
- Molecule
- Beta-(1-->2)GLUCAN export ATP-BINDING/PERMEASE protein ndva
- UniProt
- Q2YQ73
- Pockets
- 6 · best druggability 0.57
Structure
1 distinct chain · 65% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-(1-->2)GLUCAN export ATP-BINDING/PERMEASE protein ndva | protein | 599 | 65% helix, 11% strand | Q2YQ73 |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 357 | 0.57 | 0.75 | 25 | empty |
| 2 | 72 | 0.49 | 0.84 | 21 | empty |
| 3 | 132 | 0.44 | 0.76 | 21 | empty |
| 4 | 99 | 0.40 | 0.76 | 18 | empty |
| 5 | 54 | 0.29 | 0.74 | 9 | empty |
Compared structures
- 7ZO9 · cryo-EM structure of CGT ABC transporter in vanadate trapped state · an experimental structure of the same protein · chain A against A, TM-score 0.90
- 7ZNU · cryo-EM structure of CGT ABC transporter in detergent micelle · an experimental structure of the same protein · chain A against A, TM-score 0.89
- 7ZO8 · cryo-EM structure of CGT ABC transporter in nanodisc apo state · an experimental structure of the same protein · chain A against B, TM-score 0.80
- 7ZOA · cryo-EM structure of CGT ABC transporter in presence of CBG substrate · an experimental structure of the same protein · chain A against A, TM-score 0.80
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2YQ73
- Elsewhere: UniProt Q2YQ73 · AlphaFold DB Q2YQ73
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