Research workbench
AlphaFold monomer V2.0 prediction for NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial (Q9SK66)
Analyse AlphaFold monomer V2.0 prediction for NADH dehydrogenase [ubiquinone] 1 alpha… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9SK66
- Type
- protein
- Length
- 402 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5BeA89782341f98147F2D811B063F91F0aE7D7bF
- Molecule
- NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial
- UniProt
- Q9SK66
- Pockets
- 3 · best druggability 0.83
Structure
1 distinct chain · 33% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial | protein | 402 | 33% helix, 14% strand | Q9SK66 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 691 | 0.83 | 0.87 | 60 | empty |
| 2 | 81 | 0.39 | 0.78 | 17 | empty |
| 3 | 68 | 0.33 | 0.76 | 14 | empty |
Compared structures
- 7AQR · Cryo-EM structure of arabidopsis thaliana complex-I (peripheral arm) · an experimental structure of the same protein · chain A against P, TM-score 0.82
- 7AQR · Cryo-EM structure of Arabidopsis thaliana Complex-I (peripheral arm) · an experimental structure of the same protein · chain A against P, TM-score 0.82
- 7ARB · Cryo-EM structure of Arabidopsis thaliana Complex-I (complete composition) · an experimental structure of the same protein · chain A against P, TM-score 0.82
- 7ARB · Cryo-EM structure of arabidopsis thaliana complex-I (complete composition) · an experimental structure of the same protein · chain A against P, TM-score 0.82
- 7AR8 · Cryo-EM structure of arabidopsis thaliana complex-I (closed conformation) · an experimental structure of the same protein · chain A against P, TM-score 0.81
- 7AR8 · Cryo-EM structure of Arabidopsis thaliana complex-I (closed conformation) · an experimental structure of the same protein · chain A against P, TM-score 0.81
- 7AR7 · Cryo-EM structure of Arabidopsis thaliana complex-I (open conformation) · an experimental structure of the same protein · chain A against P, TM-score 0.81
- 7AR7 · Cryo-EM structure of arabidopsis thaliana complex-I (open conformation) · an experimental structure of the same protein · chain A against P, TM-score 0.81
- 8BPX · Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (Complete composition) · an experimental structure of the same protein · chain A against P, TM-score 0.78
- 8BEE · Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (CI peripheral core) · an experimental structure of the same protein · chain A against P, TM-score 0.78
- 8BQ6 · Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (Complete conformation… · an experimental structure of the same protein · chain A against P, TM-score 0.78
- 8BQ5 · Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (Complete conformation… · an experimental structure of the same protein · chain A against P, TM-score 0.78
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9SK66
- Elsewhere: UniProt Q9SK66 · AlphaFold DB Q9SK66
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