Research workbench
AlphaFold monomer V2.0 prediction for nucleoid-associated protein VV1_3120 (Q8D867)
Analyse AlphaFold monomer V2.0 prediction for nucleoid-associated protein VV1_3120… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8D867
- Type
- protein
- Length
- 333 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x4d07E6a23DeB6B95bd9b90EcB67368b7e8D3B77e
- Molecule
- Nucleoid-associated protein VV1_3120
- UniProt
- Q8D867
- Pockets
- 3 · best druggability 0.59
Structure
1 distinct chain · 40% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoid-associated protein VV1_3120 | protein | 333 | 40% helix, 28% strand | Q8D867 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 341 | 0.59 | 0.77 | 34 | empty |
| 2 | 81 | 0.37 | 0.76 | 17 | empty |
| 3 | 51 | 0.27 | 0.74 | 14 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8D867
- Elsewhere: UniProt Q8D867 · AlphaFold DB Q8D867
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