Research workbench
AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase (Q8ZWY4)
Analyse AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase (Q8ZWY4) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8ZWY4
- Type
- protein
- Length
- 183 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x35612D34a32C306CA4fc1edA9360D1F717e25950
- Molecule
- Nucleoside diphosphate kinase
- UniProt
- Q8ZWY4
- Pockets
- 1 · best druggability 0.71
Structure
1 distinct chain · 54% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoside diphosphate kinase | protein | 183 | 54% helix, 14% strand | Q8ZWY4 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 473 | 0.71 | 0.81 | 40 | empty |
Compared structures
- 1XQI · Crystal Structure Analysis of an NDP kinase from Pyrobaculum aerophilum · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 1XQI · Crystal structure analysis of an ndp kinase from pyrobaculum aerophilum · an experimental structure of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8ZWY4
- Elsewhere: UniProt Q8ZWY4 · AlphaFold DB Q8ZWY4
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