Research workbench
AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase (O51419)
Analyse AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase (O51419) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O51419
- Type
- protein
- Length
- 167 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x362a6d063b1B7E1B6EfD3A9A7CA3612e3FE037AA
- Molecule
- Nucleoside diphosphate kinase
- UniProt
- O51419
- Pockets
- 1 · best druggability 0.58
Structure
1 distinct chain · 49% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoside diphosphate kinase | protein | 167 | 49% helix, 17% strand | O51419 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 168 | 0.58 | 0.82 | 29 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 4DZ6 · Transition state mimic of nucleoside-diphosphate kinase from borrelia burgdorferi with… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 4DZ6 · Transition state mimic of nucleoside-diphosphate kinase from borrelia burgdorferi with… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 4DI6 · Crystal structure of nucleoside-diphosphate kinase from borrelia burgdorferi · an experimental structure of the same protein · chain A against E, TM-score 0.98
- 4DI6 · crystal structure of nucleoside-diphosphate kinase from Borrelia burgdorferi · an experimental structure of the same protein · chain A against E, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O51419
- Elsewhere: UniProt O51419 · AlphaFold DB O51419
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.