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AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase 7 (Q5E9Y9)

Analyse AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase 7 (Q5E9Y9) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q5E9Y9
Type: protein
Length: 377 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x92aBF7FbE5b4A62e611253Dd271820D19bCD91cc
Molecule: Nucleoside diphosphate kinase 7
UniProt: Q5E9Y9
Pockets: 6 · best druggability 0.73

Structure

1 distinct chain · 37% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nucleoside diphosphate kinase 7	protein	377	37% helix, 26% strand	Q5E9Y9

Pockets

6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	633	0.73	0.80	67	empty
2	127	0.47	0.79	24	empty
3	92	0.46	0.81	18	empty
4	73	0.42	0.80	19	empty
5	95	0.35	0.74	16	empty

Compared structures

8OTZ · 48-nm repeat of the native axonemal doublet microtubule from bovine sperm · an experimental structure of the same protein · chain A against AW, TM-score 0.95
9CPB · Atomic model of bovine Fallopian tube cilia doublet microtubule (48-nm periodicity) · an experimental structure of the same protein · chain A against 4J, TM-score 0.94
7RRO · Structure of the 48-nm repeat doublet microtubule from bovine tracheal cilia · an experimental structure of the same protein · chain A against 6, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5E9Y9
Elsewhere: UniProt Q5E9Y9 · AlphaFold DB Q5E9Y9

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