Research workbench
AlphaFold monomer V2.0 prediction for rotenone-insensitive NADH- ubiquinone oxidoreductase, mitochondrial (P32340)
Analyse AlphaFold monomer V2.0 prediction for rotenone-insensitive NADH- ubiquinone… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P32340
- Type
- protein
- Length
- 513 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x29881a02D129107C6a36da89fe03D8284a85EFE1
- Molecule
- Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial
- UniProt
- P32340
- Pockets
- 5 · best druggability 0.80
Structure
1 distinct chain · 31% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial | protein | 513 | 31% helix, 25% strand | P32340 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1030 | 0.80 | 0.82 | 103 | empty |
| 2 | 77 | 0.42 | 0.80 | 18 | empty |
| 3 | 55 | 0.40 | 0.82 | 19 | empty |
| 4 | 71 | 0.40 | 0.79 | 17 | empty |
| 5 | 60 | 0.29 | 0.74 | 14 | empty |
Compared structures
- 4G6H · Crystal structure of ndh with NADH · an experimental structure of the same protein · chain A against A, TM-score 0.91
- 4G6H · Crystal structure of NDH with NADH · an experimental structure of the same protein · chain A against A, TM-score 0.91
- 4G73 · Crystal structure of NDH with NADH and Qui · an experimental structure of the same protein · chain A against A, TM-score 0.91
- 4G73 · Crystal structure of ndh with NADH and quinone · an experimental structure of the same protein · chain A against A, TM-score 0.91
- 4G74 · Crystal structure of ndh with quinone · an experimental structure of the same protein · chain A against A, TM-score 0.91
- 4G74 · Crystal structure of NDH with Qui · an experimental structure of the same protein · chain A against A, TM-score 0.91
- 4G6G · Crystal structure of ndh with trt · an experimental structure of the same protein · chain A against A, TM-score 0.91
- 4G6G · Crystal structure of NDH with TRT · an experimental structure of the same protein · chain A against A, TM-score 0.91
- 4GAP · Structure of the Ndi1 protein from Saccharomyces cerevisiae in complex with NAD+ · an experimental structure of the same protein · chain A against A, TM-score 0.90
- 4GAP · Structure of the NDI1 protein from saccharomyces cerevisiae in complex with NAD+ · an experimental structure of the same protein · chain A against A, TM-score 0.90
- 4G9K · Structure of the Ndi1 protein from Saccharomyces cerevisiae · an experimental structure of the same protein · chain A against A, TM-score 0.90
- 4G9K · Structure of the NDI1 protein from saccharomyces cerevisiae · an experimental structure of the same protein · chain A against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P32340
- Elsewhere: UniProt P32340 · AlphaFold DB P32340
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