Research workbench
AlphaFold monomer V2.0 prediction for nidogen (A1Z877)
Analyse AlphaFold monomer V2.0 prediction for nidogen (A1Z877) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A1Z877
- Type
- protein
- Length
- 1,350 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xf4ED13986579E8e227b3ED6c02276c648754EC27
- Molecule
- Nidogen
- UniProt
- A1Z877
- Pockets
- 11 · best druggability 0.79
Structure
1 distinct chain · 7% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nidogen | protein | 1350 | 7% helix, 41% strand | A1Z877 |
Pockets
11 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 337 | 0.79 | 0.89 | 46 | empty |
| 2 | 689 | 0.69 | 0.77 | 88 | empty |
| 3 | 238 | 0.58 | 0.79 | 34 | empty |
| 4 | 278 | 0.54 | 0.76 | 39 | empty |
| 5 | 51 | 0.42 | 0.83 | 17 | empty |
Modifications
Observed in the structure: 39 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A1Z877
- Elsewhere: UniProt A1Z877 · AlphaFold DB A1Z877
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