Research workbench
AlphaFold monomer V2.0 prediction for nucleoporin NDC1 (Q8VCB1)
Analyse AlphaFold monomer V2.0 prediction for nucleoporin NDC1 (Q8VCB1) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8VCB1
- Type
- protein
- Length
- 673 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x8fCa577425962E967D175b7cf864132866e2F7F9
- Molecule
- Nucleoporin NDC1
- UniProt
- Q8VCB1
- Pockets
- 6 · best druggability 0.62
Structure
1 distinct chain · 58% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoporin NDC1 | protein | 673 | 58% helix, 1% strand | Q8VCB1 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 390 | 0.62 | 0.77 | 49 | empty |
| 2 | 95 | 0.55 | 0.85 | 21 | empty |
| 3 | 136 | 0.41 | 0.74 | 19 | empty |
| 4 | 87 | 0.39 | 0.76 | 17 | empty |
| 5 | 57 | 0.30 | 0.74 | 11 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8VCB1
- Elsewhere: UniProt Q8VCB1 · AlphaFold DB Q8VCB1
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