Research workbench
AlphaFold monomer V2.0 prediction for nucleoporin NDC1 (Q298S5)
Analyse AlphaFold monomer V2.0 prediction for nucleoporin NDC1 (Q298S5) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q298S5
- Type
- protein
- Length
- 579 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7F88b78Bd43250971E3B1b401f8c2B17562d5F7C
- Molecule
- Nucleoporin NDC1
- UniProt
- Q298S5
- Pockets
- 6 · best druggability 0.65
Structure
1 distinct chain · 68% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoporin NDC1 | protein | 579 | 68% helix, 2% strand | Q298S5 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 428 | 0.65 | 0.78 | 51 | empty |
| 2 | 249 | 0.63 | 0.81 | 26 | empty |
| 3 | 224 | 0.52 | 0.77 | 28 | empty |
| 4 | 72 | 0.42 | 0.80 | 13 | empty |
| 5 | 154 | 0.40 | 0.73 | 24 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q298S5
- Elsewhere: UniProt Q298S5 · AlphaFold DB Q298S5
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