Research workbench
AlphaFold monomer V2.0 prediction for nucleoporin NDC1 (Q7SZC5)
Analyse AlphaFold monomer V2.0 prediction for nucleoporin NDC1 (Q7SZC5) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q7SZC5
- Type
- protein
- Length
- 671 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x927Dca1Cb01AabDcD7D05D93F2C57435a5C5C603
- Molecule
- Nucleoporin NDC1
- UniProt
- Q7SZC5
- Pockets
- 9 · best druggability 0.77
Structure
1 distinct chain · 61% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoporin NDC1 | protein | 671 | 61% helix, 1% strand | Q7SZC5 |
Pockets
9 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1086 | 0.77 | 0.79 | 72 | empty |
| 2 | 179 | 0.56 | 0.81 | 24 | empty |
| 3 | 130 | 0.44 | 0.76 | 21 | empty |
| 4 | 61 | 0.43 | 0.82 | 16 | empty |
| 5 | 96 | 0.41 | 0.76 | 17 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7SZC5
- Elsewhere: UniProt Q7SZC5 · AlphaFold DB Q7SZC5
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