Research workbench
AlphaFold monomer V2.0 prediction for nucleoporin ndc-1 (Q60M68)
Analyse AlphaFold monomer V2.0 prediction for nucleoporin ndc-1 (Q60M68) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q60M68
- Type
- protein
- Length
- 587 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xa870d516e0F9a40516E0De78529921327CFBc8ee
- Molecule
- Nucleoporin ndc-1
- UniProt
- Q60M68
- Pockets
- 7 · best druggability 0.72
Structure
1 distinct chain · 64% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoporin ndc-1 | protein | 587 | 64% helix, 1% strand | Q60M68 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 316 | 0.72 | 0.84 | 48 | empty |
| 2 | 348 | 0.56 | 0.75 | 45 | empty |
| 3 | 131 | 0.39 | 0.74 | 24 | empty |
| 4 | 113 | 0.38 | 0.74 | 24 | empty |
| 5 | 59 | 0.30 | 0.74 | 13 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q60M68
- Elsewhere: UniProt Q60M68 · AlphaFold DB Q60M68
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