Research workbench
AlphaFold monomer V2.0 prediction for nibrin (O60934)
Analyse AlphaFold monomer V2.0 prediction for nibrin (O60934) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O60934
- Type
- protein
- Length
- 754 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9F605311B7e26e76340423EfAfbE5e2EFc7A0b7C
- Molecule
- Nibrin
- UniProt
- O60934
- Pockets
- 6 · best druggability 0.57
Structure
1 distinct chain · 18% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nibrin | protein | 754 | 18% helix, 10% strand | O60934 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 119 | 0.57 | 0.84 | 22 | empty |
| 2 | 273 | 0.52 | 0.75 | 33 | empty |
| 3 | 207 | 0.47 | 0.75 | 25 | empty |
| 4 | 82 | 0.45 | 0.81 | 16 | empty |
| 5 | 140 | 0.43 | 0.75 | 18 | empty |
Compared structures
- 8BAH · Human Mre11-Nbs1 complex · an experimental structure of the same protein · chain A against C, TM-score 0.04
- 7SID · Human atm dimer bound to NBS1 · an experimental structure of the same protein · chain A against B, TM-score 0.01
- 7SID · Human ATM Dimer Bound to Nbs1 · an experimental structure of the same protein · chain A against D, TM-score 0.01
- 5WQD · Crystal structure of TRF2 trfh in complex with an NBS1 peptide · an experimental structure of the same protein · chain A against H, TM-score 0.01
- 5WQD · Crystal structure of TRF2 TRFH in complex with an NBS1 peptide · an experimental structure of the same protein · chain A against H, TM-score 0.01
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O60934
- Elsewhere: UniProt O60934 · AlphaFold DB O60934
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