Research workbench
AlphaFold monomer V2.0 prediction for periplasmic nitrate reductase, electron transfer subunit (Q53177)
Analyse AlphaFold monomer V2.0 prediction for periplasmic nitrate reductase, electron… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q53177
- Type
- protein
- Length
- 154 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd1A2963012bEcbC7A8f505464439Ab678C48936f
- Molecule
- Periplasmic nitrate reductase, electron transfer subunit
- UniProt
- Q53177
- Pockets
- 2 · best druggability 0.68
Structure
1 distinct chain · 23% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Periplasmic nitrate reductase, electron transfer subunit | protein | 154 | 23% helix, 8% strand | Q53177 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 331 | 0.68 | 0.82 | 39 | empty |
| 2 | 54 | 0.28 | 0.74 | 18 | empty |
Compared structures
- 1OGY · Crystal structure of the heterodimeric nitrate reductase from rhodobacter sphaeroides · an experimental structure of the same protein · chain A against B, TM-score 0.75
- 1OGY · Crystal structure of the heterodimeric nitrate reductase from Rhodobacter sphaeroides · an experimental structure of the same protein · chain A against B, TM-score 0.75
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q53177
- Elsewhere: UniProt Q53177 · AlphaFold DB Q53177
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