Research workbench
AlphaFold monomer V2.0 prediction for periplasmic nitrate reductase (Q3Z001)
Analyse AlphaFold monomer V2.0 prediction for periplasmic nitrate reductase (Q3Z001) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q3Z001
- Type
- protein
- Length
- 828 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x78Cc7f9BF18AF8279e492D45EE7Fe9d7cC6f6D07
- Molecule
- Periplasmic nitrate reductase
- UniProt
- Q3Z001
- Pockets
- 5 · best druggability 0.81
Structure
1 distinct chain · 36% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Periplasmic nitrate reductase | protein | 828 | 36% helix, 19% strand | Q3Z001 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 164 | 0.81 | 0.97 | 40 | empty |
| 2 | 144 | 0.81 | 0.98 | 41 | empty |
| 3 | 357 | 0.56 | 0.75 | 52 | empty |
| 4 | 93 | 0.35 | 0.74 | 18 | empty |
| 5 | 54 | 0.32 | 0.77 | 12 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3Z001
- Elsewhere: UniProt Q3Z001 · AlphaFold DB Q3Z001
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