Research workbench
AlphaFold monomer V2.0 prediction for periplasmic nitrate reductase (B5YWZ7)
Analyse AlphaFold monomer V2.0 prediction for periplasmic nitrate reductase (B5YWZ7) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B5YWZ7
- Type
- protein
- Length
- 828 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xA3982b0D16daaC5E84d2174159ed91c4Ce1827a7
- Molecule
- Periplasmic nitrate reductase
- UniProt
- B5YWZ7
- Pockets
- 6 · best druggability 0.81
Structure
1 distinct chain · 36% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Periplasmic nitrate reductase | protein | 828 | 36% helix, 19% strand | B5YWZ7 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 171 | 0.81 | 0.97 | 42 | empty |
| 2 | 123 | 0.80 | 0.98 | 38 | empty |
| 3 | 314 | 0.55 | 0.75 | 44 | empty |
| 4 | 79 | 0.33 | 0.74 | 19 | empty |
| 5 | 66 | 0.32 | 0.76 | 17 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B5YWZ7
- Elsewhere: UniProt B5YWZ7 · AlphaFold DB B5YWZ7
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