Research workbench
AlphaFold monomer V2.0 prediction for udp-N-acetylmuramoyl-L-alanyl- D-glutamate--2,6-diaminopimelate ligase (Q6D0H8)
Analyse AlphaFold monomer V2.0 prediction for udp-N-acetylmuramoyl-L-alanyl… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q6D0H8
- Type
- protein
- Length
- 495 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xf083204683ca2b48e920fd04E8375004D7FA0df7
- Molecule
- Udp-N-acetylmuramoyl-L-alanyl-D-glutamate-- 2,6-diaminopimelate ligase
- UniProt
- Q6D0H8
- Pockets
- 4 · best druggability 0.72
Structure
1 distinct chain · 34% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Udp-N-acetylmuramoyl-L-alanyl-D-glutamate-- 2,6-diaminopimelate ligase | protein | 495 | 34% helix, 24% strand | Q6D0H8 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 798 | 0.72 | 0.78 | 86 | empty |
| 2 | 176 | 0.56 | 0.81 | 30 | empty |
| 3 | 63 | 0.35 | 0.77 | 16 | empty |
| 4 | 69 | 0.31 | 0.74 | 14 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6D0H8
- Elsewhere: UniProt Q6D0H8 · AlphaFold DB Q6D0H8
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