Research workbench
AlphaFold monomer V2.0 prediction for udp-N-acetylmuramoyl-L-alanyl- D-glutamate--2,6-diaminopimelate ligase (O85298)
Analyse AlphaFold monomer V2.0 prediction for udp-N-acetylmuramoyl-L-alanyl… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O85298
- Type
- protein
- Length
- 497 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x4Ef77Afb5a3D9F41c95Be3227D1CC986CCb61835
- Molecule
- Udp-N-acetylmuramoyl-L-alanyl-D-glutamate-- 2,6-diaminopimelate ligase
- UniProt
- O85298
- Pockets
- 3 · best druggability 0.75
Structure
1 distinct chain · 37% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Udp-N-acetylmuramoyl-L-alanyl-D-glutamate-- 2,6-diaminopimelate ligase | protein | 497 | 37% helix, 26% strand | O85298 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1143 | 0.75 | 0.78 | 106 | empty |
| 2 | 62 | 0.68 | 0.95 | 18 | empty |
| 3 | 75 | 0.37 | 0.77 | 16 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O85298
- Elsewhere: UniProt O85298 · AlphaFold DB O85298
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